出現紀錄

Historical data of spore availability for 109 spontaneous and cultivated ferns and lycopods taxa in Portugal (1926 – 2013)

最新版本 發佈 2023年12月7日
此資源尚未向GBIF註冊
發布日期:
2023年12月7日
Published by:
No organization
授權條款:
CC-BY-NC 4.0

下載最新版本的 Darwin Core Archive (DwC-A) 資源，或資源詮釋資料的 EML 或 RTF 文字檔。

DwC-A資料集 下載 3,383 紀錄 在 English 中 (220 KB) - 更新頻率: 有可能更新，但不確知何時
元數據EML檔 下載 在 English 中 (50 KB)
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說明

This dataset provides information on the exact day and site where spores of 109 taxa of ferns and lycopos were collected for the Index Seminum (seed exchange catalogue) of the Botanic Garden of the University of Coimbra, between 1926 and 2013. Spores were collected from spontaneous and cultivated individuals across Portugal, including both native and introduced taxa. The database consists of 3,383 curated records with information on the species, or infraspecific taxa (including authority), and the day and site where spores were collected. All records are georeferenced and provided with a confidence interval for the collection site.

資料紀錄

此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 3,383 筆紀錄。

此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。

版本

以下的表格只顯示可公開存取資源的已發布版本。

如何引用

研究者應依照以下指示引用此資源。:

Heleno R, Costa J M, Covelo F, Santos J, Lopes P, Gouveia A C, Matos A, Salgado A, Girão da Cruz M T, Farminhão J, Horta M, Barreto G, Marques A V, Craveiro L, Pinto P, Santos M, Nunes B, Barreiro M, Dias A, Rodrigues G, Esteves L, Wanderley M, Santos I, Artiaga J P, Veríssimo J, Vilhena I, Moniz L, Leão A, Couras M, Mendes S B, Nereu M, Silva A M D D, Sales F, Gonçalves M T, Coutinho A, Freitas H, Silva J S, Ramos J, Marchante E, Timóteo S (2023). Historical data of spore availability for 109 spontaneous and cultivated ferns and lycopods taxa in Portugal (1926 – 2013). Version 1.0. No organization. Occurrence dataset. http://194.210.120.147:8080/resource?r=ferns_lycopods_jbuc_is&v=1.0

權利

研究者應尊重以下權利聲明。:

This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF 註冊

此資源尚未向GBIF註冊

關鍵字

Occurrence; Ferns; Lycopods; Historical data; Index Seminum; Spores; Portugal

聯絡資訊

Ruben Heleno
  • 元數據提供者 ●
  • 出處 ●
  • 連絡人
Professor
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-4808-4907
José Miguel Costa
  • 出處
Technician
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-4991-7122
Filipe Covelo
  • 元數據提供者 ●
  • 出處
Collection Manager
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0003-0432-2843
Joaquim Santos
  • 元數據提供者 ●
  • 出處
Collection Manager
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-2160-4968
Pedro Lopes
  • 出處
Technician
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-5078-0602
António Carmo Gouveia
  • 出處
Researcher
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-7175-0365
Arménio Matos
  • 出處
Gardener
Botanic Garden of the University of Coimbra, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
Agostinho Salgado
  • 出處
Gardener
Botanic Garden of the University of Coimbra, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
Maria Teresa Girão da Cruz
  • 出處
Director
Botanic Garden of the University of Coimbra, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0003-2625-2567
João Farminhão
  • 出處
Researcher
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-8811-9895
Marta Horta
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martins de Freitas
3000-456 Coimbra
PT
Guilherme Barreto
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
https://orcid.org/0000-0002-6226-0567
Ana V. Marques
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Leonardo Craveiro
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Patrícia Pinto
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Matilde Santos
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Bárbara Nunes
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Margarida Barreiro
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
André Dias
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Gabriel Rodrigues
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Leonor Esteves
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Marina Wanderley
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Inês Santos
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
José Pedro Artiaga
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
João Veríssimo
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Inês Vilhena
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Lucas Moniz
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Arthur Leão
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Marta Couras
  • 出處
BSc Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
Sara Beatriz Mendes
  • 出處
PhD Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-3149-9743
Mauro Nereu
  • 出處
PhD Student
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0001-7484-1177
Ana Margarida Dias da Silva
  • 出處
Technician
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0003-1247-8346
Fátima Sales
  • 出處
Professor
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0003-2876-0610
Maria Teresa Gonçalves
  • 出處
Professor
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0002-3277-5615
António Coutinho
  • 出處
Professor
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-292 Coimbra
PT
https://orcid.org/0000-0002-5371-6411
Helena Freitas
  • 出處
Professor
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-292 Coimbra
PT
https://orcid.org/0000-0002-1907-9615
Joaquim S. Silva
  • 出處
Professor
Escola Superior Agrária, Instituto Politécnico de Coimbra
Bencanta
3045-601 Coimbra
PT
https://orcid.org/0000-0001-6604-6878
Jaime Ramos
  • 出處
Professor
MARE - Marine and Environmental Sciences Centre / ARNET – Aquatic Research Network, Department of Life Sciences, University of Coimbra
3004-517 Coimbra
PT
https://orcid.org/0000-0002-9533-987X
Elizabete Marchante
  • 出處
Researcher
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
PT
https://orcid.org/0000-0003-1303-7489
Sérgio Timóteo
  • 元數據提供者 ●
  • 出處 ●
  • 使用者 ●
  • 連絡人
Researcher
Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra
Calçada Martim de Freitas
3000-456 Coimbra
https://orcid.org/0000-0003-2417-3259

地理涵蓋範圍

Mainland Portugal

界定座標範圍 緯度南界 經度西界 [37.283, -9.048], 緯度北界 經度東界 [41.642, -6.905]

分類群涵蓋範圍

Plants identified to species or infraspecific level.

Kingdom Plantae
Phylum Tracheophyta
Class Lycopodiopsida, Polypodiopsida

時間涵蓋範圍

起始日期 / 結束日期 1926-05-06 / 2013-11-30

取樣方法

This dataset includes the records collected since 1926 by the staff of the Botanic Garden of the University of Coimbra. It includes the date, location, and species or infraspecific taxa for the spores collected every year to integrate the Batanic Garden of the University of Coimbra Index Seminum.

研究範圍 Data covers mainland Portugal.
品質控管 Intermidiate quality checks at data entry, taxonomic harmonization and georeferencing stages to detect and correct errors. Final quality check of 1000 random entries.

方法步驟描述:

  1. Taxonomic harmonization: - initial verification by botanist from the Herbarium of the University of Coimbra, to check small typos and authorities misspellings; - harmonization through the Global Name Resolver using function gnr_resolve from the R (R Core Team 2023) package taxixe 0.9.9 (Chamberlain & Szöcs 2013, Chamberlain et al. 2020), against the Global Biodiversity Information Facility - GBIF backbone, accessed on 2023-03-01; - species classification as native or introduced to Portugal based on the World Checklist of Vascular Plants - WCVP (Govaerts et al. 2021), using function wcvp_distribution from the R package rWCVP (Brown et al. 2023), accessed on 2023-06-28. The data set includes the original name, and the harmonized taxonomy based on GBIF and WCVP. Georeferencing protocol: - original record of collection localities clustered based on textual description using OpenRefine, followed by manual inspection; - locations georeferenced with point-radius georeferencing method (Chapman & Wieczorek 2020, Zermoglio et al. 2020), with geographic coordinates, and corresponding confidence intervals, obtained with Maps.ie (Maps.ie 2023), and uncertainty obtained with Georeferencing Calculator (Bloom et al. 2020; Wieczorek et al. 2021); - administrative levels obatined with Google Geocoding API through the Reverse Geocoding Service Google 2022); - elevation retrieved with Google Elevation API.

引用文獻

  1. R Core Team. (2023). R: A language and environment for statistical computing.
  2. Chamberlain, S.A. & Szöcs, E. (2013). taxize: taxonomic search and retrieval in R. F1000Research. 10.12688/f1000research.2-191.v2
  3. Chamberlain, S., Szoecs, E., Foster, Z., Arendsee, Z., Boettiger, C., Ram, K., Bartomeus, I., Baumgartner, J., O’Donnell, J. & Oksanen, J. (2020). taxize: Taxonomic information from around the web. R package version 0.9, 92.
  4. Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. (2021). The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Scientific Data 8, 215. 10.1038/s41597-021-00997-6
  5. Brown, M.J.M., Walker, B.E., Black, N., Govaerts, R.H.A., Ondo, I., Turner, R. & Nic Lughadha, E. (2023). rWCVP: a companion R package for the World Checklist of Vascular Plants. New Phytologist, 1–10. 10.1111/nph.18919
  6. Chapman, A. D. & Wieczorek, J. R. (2020). Georeferencing best practices. Version 1.0. 10.15468/doc-gg7h-s853
  7. Zermoglio P.F., Chapman A.D., Wieczorek J.R., Luna M.C. & Bloom D.A. (2020). Georeferencing Quick Reference Guide. Copenhagen: GBIF Secretariat 10.35035/e09p-h128
  8. Maps.ie. (2023). https://www.maps.ie/draw-radius-circle-map. Accessed on 2023-03-20.
  9. Bloom, D. A., Wieczorek, J. R. & Zermoglio, P. F. (2020). Georeferencing Calculator Manual. Copenhagen: GBIF Secretariat. Version 1.0. 10.35035/gdwq-3v93
  10. Wieczorek, C. & Wieczorek, J. (2020). Georeferencing Calculator; http://georeferencing.org/georefcalculator/gc.html. Accessed on 2022-08-29, 2021.
  11. Google. (2022). Google Geocoding API https://developers.google.com/maps/documentation/geocoding/start. Accessed on 2022-08-29.

額外的詮釋資料